9 docs tagged with "decontamination"

Remove host reads from sequencing data using deacon.

Fetch a pre-built deacon index for host read filtering.

Filter host reads from sequencing data using minimizer-based comparison.

Build a deacon minimizer index from a FASTA reference genome.

Remove human reads from sequencing data using nohuman.

Download the nohuman database for human read removal.

Remove human reads from sequencing data.

Remove contaminant sequences from metagenomic data.

Scrub human reads from FASTQ files.