20 docs tagged with "download"

Download and index the latest AMRFinder+ database.

Download and prepare reference databases for ARIBA analysis.

Download pre-compiled datasets required by Bactopia.

Download and provide pre-compiled datasets required by Bactopia.

Search, validate, gather, or simulate input samples.

Search, validate, gather, and standardize input samples.

Download the Bakta annotation database.

Download the pre-trained CheckM2 database.

Fetch a pre-built deacon index for host read filtering.

Download and package the DefenseFinder and CasFinder model databases.

Download the eggNOG database for functional annotation.

Download genome assemblies and annotation files from NCBI Datasets.

Download genome assemblies from NCBI Datasets.

Download and configure the GTDB-Tk reference database.

Download the MIDAS reference database.

Download assemblies and annotation files from NCBI's Assembly database.

Download bacterial genomes from NCBI's RefSeq database.

Download the nohuman database for human read removal.

Initialize human read removal database for SRA Human Scrubber.

Download the Pfam database required by Traitar.